C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088716 Smarcc1-001 ENSMUSG00000032481 10090 + 9:110132037-110240178 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088716
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088716 9.109±4.66 16.537±0.93 6.893±0.76 13.952±7.32 9.622±4.13 8.169±2.01 2.860±0.44 5.367±0.59 5.546±3.30 6.781±0.64 1.653±0.10 19.531±5.62 10.057±4.05 4.234±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0002 VISTA 9:109592964-110196468

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001741 IDA XY body
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0006323 TAS DNA packaging
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008286 IDA insulin receptor signaling pathway
GO:0009887 IMP organ morphogenesis
GO:0016514 TAS SWI/SNF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0047485 IEA protein N-terminus binding
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254480 SMARCC1-001 protein_coding Homo_sapiens 0 4329
ENST00000425518 SMARCC1-002 processed_transcript Homo_sapiens 0 4120
ENST00000454240 SMARCC1-004 nonsense_mediated_decay Homo_sapiens 0 516
ENST00000462198 SMARCC1-006 processed_transcript Homo_sapiens 0 649
ENST00000483847 SMARCC1-008 retained_intron Homo_sapiens 0 608

Loading