C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088874 Hmgb3-004 ENSMUSG00000015217 10090 + X:71555990-71560676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000088874
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000088874 1.230±0.38 1.339±0.00 15.373±0.00 1.238±0.51 3.184±1.33 1.754±0.51 0.604±0.16 1.357±0.21 7.269±1.80 0.304±0.00 1.519±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DG CIL_0009DG_0002 VISTA X:71400355-72001555
CIL_0000UN CIL_0000UN_0003 CGP X:71420060-71560676
CIL_0001AV CIL_0001AV_0002 CGP X:71555918-71669257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0045578 IDA negative regulation of B cell differentiation
GO:0045638 IDA negative regulation of myeloid cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 1740
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 579
ENST00000400214 HMGB3P7-001 processed_pseudogene Homo_sapiens 0 361
ENST00000403971 HMGB3P19-001 processed_pseudogene Homo_sapiens 0 508
ENST00000406327 HMGB3P18-001 processed_pseudogene Homo_sapiens 0 551
ENST00000411913 HMGB3P2-001 processed_pseudogene Homo_sapiens 0 599
ENST00000413333 HMGB3P31-001 processed_pseudogene Homo_sapiens 0 667
ENST00000414981 HMGB3P23-001 processed_pseudogene Homo_sapiens 0 348
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 0 678
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 791
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 649
ENST00000433260 HMGB3P24-001 processed_pseudogene Homo_sapiens 0 701
ENST00000434734 HMGB3P10-001 processed_pseudogene Homo_sapiens 0 566
ENST00000438745 HMGB3P12-001 processed_pseudogene Homo_sapiens 0 350
ENST00000440127 HMGB3P11-001 processed_pseudogene Homo_sapiens 0 654
ENST00000441799 HMGB3P9-001 processed_pseudogene Homo_sapiens 0 486
ENST00000442010 HMGB3P22-002 processed_transcript Homo_sapiens 0 383
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 773
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 856
ENST00000449709 HMGB3P8-001 processed_pseudogene Homo_sapiens 0 654
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 0 623
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 824
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 0 669
ENST00000494195 HMGB3P14-001 processed_pseudogene Homo_sapiens 0 377
ENST00000504195 HMGB3P17-001 processed_pseudogene Homo_sapiens 0 296
ENST00000507326 HMGB3P15-001 processed_pseudogene Homo_sapiens 0 656
ENST00000510526 HMGB3P3-001 processed_pseudogene Homo_sapiens 0 340
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 0 298
ENST00000528472 CTD-2028E8.1-001 processed_pseudogene Homo_sapiens 0 453
ENST00000560051 HMGB3P26-001 processed_pseudogene Homo_sapiens 0 592
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 0 638
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 0 665

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