C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA methyltransferase 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088976 Dnmt3b-005 ENSMUSG00000027478 10090 + 2:153649454-153687730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverPlacentaENSMUST00000088976
Transcript ID Kidney Liver Placenta
ENSMUST00000088976 0.163±0.03 0.457±0.00 1.422±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A4 CIL_0008A4_0002 VISTA 2:153181176-153785061
CIL_0008NQ CIL_0008NQ_0002 VISTA 2:153260290-153861940
CIL_0008QN CIL_0008QN_0002 VISTA 2:153551282-154154369
CIL_00036W CIL_00036W_0002 CGP 2:153616933-153687730
CIL_0001KC CIL_0001KC_0002 CGP 2:153649450-153773310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000775 IDA chromosome, centromeric region
GO:0000792 IDA heterochromatin
GO:0003677 IDA DNA binding
GO:0003886 IDA DNA (cytosine-5-)-methyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005720 IDA nuclear heterochromatin
GO:0006306 IGI DNA methylation
GO:0006346 IGI methylation-dependent chromatin silencing
GO:0006349 IMP regulation of gene expression by genetic imprinting
GO:0008168 IDA methyltransferase activity
GO:0031503 IDA protein complex localization
GO:0043045 IEP DNA methylation involved in embryo development
GO:0045814 IMP negative regulation of gene expression, epigenetic
GO:0046872 IEA metal ion binding
GO:0071230 IDA cellular response to amino acid stimulus
GO:0090116 IEA C-5 methylation of cytosine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000201963 DNMT3B-004 protein_coding Homo_sapiens 0 595
ENST00000328111 DNMT3B-001 protein_coding Homo_sapiens 0 1631
ENST00000348286 DNMT3B-003 protein_coding Homo_sapiens 0 595
ENST00000353855 DNMT3B-002 protein_coding Homo_sapiens 0 595
ENST00000443239 DNMT3B-006 protein_coding Homo_sapiens 0 595
ENST00000456297 DNMT3B-005 protein_coding Homo_sapiens 0 595

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