C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor-like 13B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089289 Arl13b-001 ENSMUSG00000022911 10090 - 16:62793685-62847040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000089289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000089289 1.252±0.61 0.549±0.19 2.963±0.02 2.257±0.85 1.041±0.48 1.204±0.63 0.505±0.27 1.027±0.15 0.961±0.38 1.695±0.52 0.495±0.20 1.508±0.86 5.547±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B0 CIL_0003B0_0002 CGP 16:62793685-62847040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007368 IMP determination of left/right symmetry
GO:0009953 IMP dorsal/ventral pattern formation
GO:0021532 IMP neural tube patterning
GO:0021830 IMP interneuron migration from the subpallium to the cortex
GO:0021943 IMP formation of radial glial scaffolds
GO:0035058 IMP nonmotile primary cilium assembly
GO:0042384 IMP cilium assembly
GO:0060170 IDA ciliary membrane
GO:0070986 IMP left/right axis specification
GO:0072372 IDA primary cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303097 ARL13B-001 protein_coding Homo_sapiens 0 747
ENST00000335438 ARL13B-002 nonsense_mediated_decay Homo_sapiens 0 1064
ENST00000394222 ARL13B-005 protein_coding Homo_sapiens 0 1280
ENST00000460371 ARL13B-009 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000471138 ARL13B-004 protein_coding Homo_sapiens 0 1153
ENST00000475206 ARL13B-003 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000486562 ARL13B-007 processed_transcript Homo_sapiens 0 322
ENST00000492165 ARL13B-008 processed_transcript Homo_sapiens 0 322
ENST00000535334 ARL13B-201 protein_coding Homo_sapiens 0 1064

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