C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089378 Sh3bp1-201 ENSMUSG00000022436 10090 + 15:78913919-78919517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000089378
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000089378 4.476±0.80 8.374±2.58 49.421±9.84 8.636±1.73 2.011±0.26 0.887±0.09 1.003±0.22 4.371±4.93 2.053±0.70 8.668±0.38 3.440±1.94 3.369±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00040D CIL_00040D_0002 CGP 15:78877190-78919517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0004647 IEA phosphoserine phosphatase activity
GO:0004721 ISS phosphoprotein phosphatase activity
GO:0005515 IPI protein binding
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006470 ISS protein dephosphorylation
GO:0007088 ISS regulation of mitosis
GO:0015629 ISS actin cytoskeleton
GO:0030027 ISS lamellipodium
GO:0030496 ISS midbody
GO:0030836 ISS positive regulation of actin filament depolymerization
GO:0031072 ISO heat shock protein binding
GO:0031247 ISO actin rod assembly
GO:0032154 ISS cleavage furrow
GO:0032361 IDA pyridoxal phosphate catabolic process
GO:0032465 ISS regulation of cytokinesis
GO:0032587 ISS ruffle membrane
GO:0033883 IDA pyridoxal phosphatase activity
GO:0042803 IPI protein homodimerization activity
GO:0070938 ISS contractile ring
GO:0071318 ISO cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215904 PDXP-001 protein_coding Homo_sapiens 0 1125
ENST00000403251 PDXP-002 protein_coding Homo_sapiens 0 399
ENST00000451997 SH3BP1-008 nonsense_mediated_decay Homo_sapiens 0 399

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