C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EF hand calcium binding domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090277 Efcab1-201 ENSMUSG00000068617 10090 + 16:14906637-14925879 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090277
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090277 0.373±0.22 0.628±0.27 1.630±0.05 1.844±1.01 0.138±0.05 0.139±0.07 0.116±0.08 0.064±0.04 0.059±0.02 2.499±0.31 0.017±0.01 2.957±1.00 0.123±0.12 1.104±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000923 CIL_000923_0002 VISTA 16:14752402-15353742
CIL_0008T2 CIL_0008T2_0002 VISTA 16:14754450-15355590
CIL_000861 CIL_000861_0002 VISTA 16:14784592-15385708
CIL_0008K9 CIL_0008K9_0002 VISTA 16:14894413-15496116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262103 EFCAB1-001 protein_coding Homo_sapiens 0 808
ENST00000433756 EFCAB1-201 protein_coding Homo_sapiens 0 580
ENST00000519425 EFCAB1-004 retained_intron Homo_sapiens 0 448
ENST00000521701 EFCAB1-007 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000521721 EFCAB1-009 processed_transcript Homo_sapiens 0 279
ENST00000522254 EFCAB1-006 protein_coding Homo_sapiens 0 538
ENST00000523008 EFCAB1-010 protein_coding Homo_sapiens 0 335
ENST00000523092 EFCAB1-008 protein_coding Homo_sapiens 0 580

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