C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor protein D52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091355 Tpd52-003 ENSMUSG00000027506 10090 - 3:8928626-9004478 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLiverMuscleOvaryPlacentaENSMUST00000091355
Transcript ID Adrenal Brain Liver Muscle Ovary Placenta
ENSMUST00000091355 2.882±0.20 1.526±0.08 1.036±0.00 0.910±0.06 2.835±0.86 2.759±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LP CIL_0008LP_0002 VISTA 3:8565055-9167293
CIL_0001NG CIL_0001NG_0002 CGP 3:8928626-9285333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0008284 IDA positive regulation of cell proliferation
GO:0030183 ISS B cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0046982 IDA protein heterodimerization activity
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379096 TPD52-002 protein_coding Homo_sapiens 0 361
ENST00000379097 TPD52-006 protein_coding Homo_sapiens 0 320
ENST00000448733 TPD52-201 protein_coding Homo_sapiens 0 669
ENST00000517427 TPD52-008 protein_coding Homo_sapiens 0 562
ENST00000517445 TPD52-022 retained_intron Homo_sapiens 2e-27 126
ENST00000517462 TPD52-004 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000518500 TPD52-031 retained_intron Homo_sapiens 9.94922e-44 180
ENST00000518517 TPD52-029 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000518937 TPD52-001 protein_coding Homo_sapiens 0 586
ENST00000519250 TPD52-032 processed_transcript Homo_sapiens 0 298
ENST00000519303 TPD52-003 protein_coding Homo_sapiens 0 547
ENST00000520527 TPD52-005 protein_coding Homo_sapiens 0 545
ENST00000520795 TPD52-012 protein_coding Homo_sapiens 0 207
ENST00000521241 TPD52-021 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000521354 TPD52-017 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000522364 TPD52-020 retained_intron Homo_sapiens 0 320
ENST00000522938 RP11-26J3.4-001 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000523193 TPD52-016 retained_intron Homo_sapiens 2e-25 121
ENST00000523319 TPD52-011 retained_intron Homo_sapiens 0 322
ENST00000523753 TPD52-028 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000524194 TPD52-024 retained_intron Homo_sapiens 0 259
ENST00000537855 RP11-26J3.4-201 protein_coding Homo_sapiens 0 320

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