C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group F, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091458 Nr2f1-001 ENSMUSG00000069171 10090 - 13:78188973-78199757 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091458
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091458 1.242±0.23 4.609±1.14 3.560±0.21 42.445±24.12 1.311±0.12 0.432±0.11 1.081±0.06 0.597±0.14 0.342±0.28 1.933±0.35 0.140±0.05 2.684±0.78 0.271±0.21 0.106±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0005 UCNEbase 13:76802395-80648053
CIL_0008SK CIL_0008SK_0002 VISTA 13:77592212-78193533
CIL_00083A CIL_00083A_0002 VISTA 13:78023865-78625614
CIL_0008KX CIL_0008KX_0002 VISTA 13:78144587-78747858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IDA neuron migration
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008270 IEA zinc ion binding
GO:0010977 IEA negative regulation of neuron projection development
GO:0021796 IMP cerebral cortex regionalization
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030900 IDA forebrain development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0044323 IEA retinoic acid-responsive element binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000133384 nr2f1a-001 protein_coding Danio_rerio 0 1066
ENSDART00000130163 nr2f2-001 protein_coding Danio_rerio 0 745
ENSDART00000059976 nr2f2-201 protein_coding Danio_rerio 0 678
ENST00000291442 NR2F6-001 protein_coding Homo_sapiens 0 198
ENST00000327111 NR2F1-001 protein_coding Homo_sapiens 0 4263
ENST00000394166 NR2F2-001 protein_coding Homo_sapiens 0 1020
ENST00000502982 NR2F1-003 processed_transcript Homo_sapiens 0 719
ENST00000506162 NR2F1-005 processed_transcript Homo_sapiens 0 484
ENST00000512697 NR2F1-002 processed_transcript Homo_sapiens 0 627
ENST00000615873 NR2F1-201 protein_coding Homo_sapiens 0 1838

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