C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 172, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091459 Fam172a-201 ENSMUSG00000064138 10090 + 13:77708690-78166238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091459
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091459 0.563±0.02 2.478±0.00 4.876±0.18 5.990±1.12 0.973±0.38 0.730±0.00 0.658±0.08 1.942±1.25 2.216±0.64 1.525±0.39 4.677±2.03 3.107±0.43 0.867±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0005 UCNEbase 13:76802395-80648053
CIL_00097W CIL_00097W_0002 VISTA 13:77189933-77791149
CIL_00080H CIL_00080H_0002 VISTA 13:77246465-77849738
CIL_0008SK CIL_0008SK_0002 VISTA 13:77592212-78193533
CIL_0004Z9 CIL_0004Z9_0002 CGP 13:77708690-78166238

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135954 fam172a-001 protein_coding Danio_rerio 2e-16 94
ENST00000395965 FAM172A-001 protein_coding Homo_sapiens 0 1458
ENST00000502503 FAM172A-002 nonsense_mediated_decay Homo_sapiens 0 1027
ENST00000504768 FAM172A-008 processed_transcript Homo_sapiens 0 664
ENST00000505869 FAM172A-006 protein_coding Homo_sapiens 0 797
ENST00000506398 FAM172A-004 retained_intron Homo_sapiens 0 850
ENST00000509163 FAM172A-005 protein_coding Homo_sapiens 0 1585
ENST00000509739 FAM172A-007 protein_coding Homo_sapiens 0 797
ENST00000510445 FAM172A-010 retained_intron Homo_sapiens 0 481
ENST00000511139 FAM172A-011 retained_intron Homo_sapiens 0 424

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