Transcript ID | Bladder | Brain | Liver | Ovary | Placenta | Testis |
---|---|---|---|---|---|---|
ENSMUST00000093196 | 31.658±6.67 | 38.022±0.00 | 54.916±2.80 | 78.038±38.35 | 55.989±30.73 | 38.198±0.00 |
Transcript Info |
||||||
Description: | high mobility group box 1 | |||||
---|---|---|---|---|---|---|
Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000093196 | Hmgb1-002 | ENSMUSG00000066551 | 10090 | - | 5:149048645-149051616 | protein_coding |
Expression Patterns
|
Conserved Regions | |||
---|---|---|---|
Region ID | Sub-Region | Region Type | Position |
CIL_0007UA | CIL_0007UA_0002 | VISTA | 5:149020224-149622595 |
CIL_0004CF | CIL_0004CF_0002 | CGP | 5:149046702-149215434 |
Gene Ontology | ||
---|---|---|
GO ID | Evidence Type | GO Description |
GO:0001786 | TAS | phosphatidylserine binding |
GO:0003677 | IEA | DNA binding |
GO:0005515 | IPI | protein binding |
GO:0005576 | TAS | extracellular region |
GO:0005634 | IEA | nucleus |
GO:0005737 | IEA | cytoplasm |
GO:0006954 | TAS | inflammatory response |
GO:0008201 | IEA | heparin binding |
GO:2000426 | IDA | negative regulation of apoptotic cell clearance |
Homologs | |||||
ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
ENST00000255320 | HMGB1P5-001 | transcribed_processed_pseudogene | Homo_sapiens | 0 | 865 |
ENST00000326004 | HMGB1-003 | protein_coding | Homo_sapiens | 0 | 673 |
ENST00000339872 | HMGB1-001 | protein_coding | Homo_sapiens | 0 | 1083 |
ENST00000341423 | HMGB1-004 | protein_coding | Homo_sapiens | 0 | 1083 |
ENST00000395823 | HMGB1P10-001 | processed_pseudogene | Homo_sapiens | 0 | 725 |
ENST00000399489 | HMGB1-009 | protein_coding | Homo_sapiens | 0 | 673 |
ENST00000399494 | HMGB1-011 | protein_coding | Homo_sapiens | 0 | 1083 |
ENST00000402555 | HMGB1P20-001 | processed_pseudogene | Homo_sapiens | 0 | 579 |
ENST00000405805 | HMGB1-012 | protein_coding | Homo_sapiens | 0 | 1086 |
ENST00000406019 | HMGB1P13-001 | processed_pseudogene | Homo_sapiens | 0 | 588 |
ENST00000413899 | HMGB1P11-001 | processed_pseudogene | Homo_sapiens | 0 | 704 |
ENST00000437242 | HMGB1P31-001 | processed_pseudogene | Homo_sapiens | 0 | 429 |
ENST00000438594 | HMGB1P12-001 | processed_pseudogene | Homo_sapiens | 0 | 475 |
ENST00000439613 | HMGB1P37-001 | processed_pseudogene | Homo_sapiens | 0 | 689 |
ENST00000447155 | HMGB1P16-001 | processed_pseudogene | Homo_sapiens | 0 | 534 |
ENST00000451497 | HMGB1P5-002 | processed_transcript | Homo_sapiens | 0 | 828 |
ENST00000452520 | HMGB1P26-001 | processed_pseudogene | Homo_sapiens | 0 | 595 |
ENST00000455362 | HMGB1P4-001 | processed_pseudogene | Homo_sapiens | 0 | 647 |
ENST00000459868 | FMO1-004 | processed_transcript | Homo_sapiens | 0 | 230 |
ENST00000468384 | HMGB1-007 | processed_transcript | Homo_sapiens | 0 | 246 |
ENST00000487709 | HMGB1P36-001 | processed_pseudogene | Homo_sapiens | 0 | 394 |
ENST00000490788 | HMGB1-008 | processed_transcript | Homo_sapiens | 0 | 307 |
ENST00000522557 | HMGB1P1-001 | processed_pseudogene | Homo_sapiens | 0 | 785 |
ENST00000558211 | HMGB1P8-001 | processed_pseudogene | Homo_sapiens | 0 | 255 |
ENST00000559968 | RP11-643G16.4-002 | processed_transcript | Homo_sapiens | 0 | 617 |
ENST00000569046 | RP11-673C5.1-001 | processed_pseudogene | Homo_sapiens | 0 | 856 |
ENST00000611897 | RP11-19G24.3-002 | processed_transcript | Homo_sapiens | 0 | 207 |
ENST00000615653 | RP11-19G24.3-001 | transcribed_processed_pseudogene | Homo_sapiens | 0 | 723 |