C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093201 Npm1-006 ENSMUSG00000057113 10090 - 11:33152510-33163072 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000093201
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000093201 21.078±12.44 3.334±0.92 27.501±5.89 57.682±19.92 15.805±7.54 14.418±9.79 12.068±0.36 20.136±6.11 48.459±43.80 15.440±6.40 49.444±83.03 253.333±322.74 57.612±59.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0004OL CIL_0004OL_0002 CGP 11:33152287-33203589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000055 IMP ribosomal large subunit export from nucleus
GO:0000056 IDA ribosomal small subunit export from nucleus
GO:0001652 IDA granular component
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005829 IDA cytosol
GO:0006407 IDA rRNA export from nucleus
GO:0006884 IDA cell volume homeostasis
GO:0006913 IDA nucleocytoplasmic transport
GO:0008104 IMP protein localization
GO:0008284 IDA positive regulation of cell proliferation
GO:0010824 IMP regulation of centrosome duplication
GO:0010825 IGI positive regulation of centrosome duplication
GO:0015934 IDA large ribosomal subunit
GO:0015935 IDA small ribosomal subunit
GO:0016049 IDA cell growth
GO:0016607 IDA nuclear speck
GO:0019843 IDA rRNA binding
GO:0030529 ISO ribonucleoprotein complex
GO:0031328 IDA positive regulation of cellular biosynthetic process
GO:0042273 IDA ribosomal large subunit biogenesis
GO:0042274 IDA ribosomal small subunit biogenesis
GO:0043023 ISO ribosomal large subunit binding
GO:0043024 ISO ribosomal small subunit binding
GO:0043516 IGI regulation of DNA damage response, signal transduction by p53 class mediator
GO:0045860 IDA positive regulation of protein kinase activity
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051259 ISO protein oligomerization
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290855 CLEC2D-001 protein_coding Homo_sapiens 0 680
ENST00000296930 NPM1-001 protein_coding Homo_sapiens 0 773
ENST00000343743 NPM1P14-001 processed_pseudogene Homo_sapiens 0 512
ENST00000351986 NPM1-002 protein_coding Homo_sapiens 0 1496
ENST00000393820 NPM1-003 protein_coding Homo_sapiens 0 773
ENST00000396690 CLEC2D-001 processed_pseudogene Homo_sapiens 0 507
ENST00000399021 NPM1P31-001 processed_pseudogene Homo_sapiens 0 580
ENST00000399556 NPM1P46-001 processed_pseudogene Homo_sapiens 0 555
ENST00000403105 NPM1P37-001 processed_pseudogene Homo_sapiens 0 586
ENST00000403835 NPM1P38-001 processed_pseudogene Homo_sapiens 0 497
ENST00000412580 NPM1P32-001 processed_pseudogene Homo_sapiens 0 390
ENST00000412758 NPM1P40-001 processed_pseudogene Homo_sapiens 0 499
ENST00000414095 NPM1P4-001 processed_pseudogene Homo_sapiens 0 368
ENST00000415681 NPM1P36-001 processed_pseudogene Homo_sapiens 0 261
ENST00000423757 NPM1P12-001 processed_pseudogene Homo_sapiens 0 305
ENST00000426339 NPM1P26-001 processed_pseudogene Homo_sapiens 0 560
ENST00000427761 NPM1P22-001 processed_pseudogene Homo_sapiens 0 575
ENST00000428039 NPM1P24-001 processed_pseudogene Homo_sapiens 0 562
ENST00000428821 NPM1P34-001 processed_pseudogene Homo_sapiens 0 300
ENST00000429734 NPM1P25-001 processed_pseudogene Homo_sapiens 0 617
ENST00000434232 NPM1P18-001 processed_pseudogene Homo_sapiens 0 527
ENST00000436002 NPM1P48-001 processed_pseudogene Homo_sapiens 0 298
ENST00000438918 NPM1P33-001 processed_pseudogene Homo_sapiens 0 617
ENST00000440193 NPM1P23-001 transcribed_processed_pseudogene Homo_sapiens 0 387
ENST00000443470 NPM1P51-001 processed_pseudogene Homo_sapiens 3e-36 156
ENST00000444971 CLEC2D-017 nonsense_mediated_decay Homo_sapiens 0 520
ENST00000448027 NPM1P49-001 processed_pseudogene Homo_sapiens 0 257
ENST00000449818 NPM1P39-001 processed_pseudogene Homo_sapiens 0 651
ENST00000450070 NPM1P19-001 processed_pseudogene Homo_sapiens 0 510
ENST00000452663 NPM1P13-001 processed_pseudogene Homo_sapiens 0 459
ENST00000453156 NPM1P9-001 processed_pseudogene Homo_sapiens 0 527
ENST00000458237 NPM1P8-001 processed_pseudogene Homo_sapiens 0 536
ENST00000483112 NPM1P29-001 processed_pseudogene Homo_sapiens 0 503
ENST00000492269 NPM1P28-001 processed_pseudogene Homo_sapiens 0 200
ENST00000502784 NPM1P27-001 processed_pseudogene Homo_sapiens 0 640
ENST00000512920 NPM1P41-001 processed_pseudogene Homo_sapiens 0 235
ENST00000513394 NPM1P21-001 processed_pseudogene Homo_sapiens 0 634
ENST00000517671 NPM1-004 protein_coding Homo_sapiens 0 736
ENST00000518264 NPM1P52-001 processed_pseudogene Homo_sapiens 0 311
ENST00000518587 NPM1-008 retained_intron Homo_sapiens 0 627
ENST00000519955 NPM1-011 retained_intron Homo_sapiens 3e-40 169
ENST00000521088 NPM1P6-001 processed_pseudogene Homo_sapiens 0 656
ENST00000521260 NPM1-009 retained_intron Homo_sapiens 0 211
ENST00000521672 NPM1-005 protein_coding Homo_sapiens 0 479
ENST00000521710 NPM1-010 retained_intron Homo_sapiens 0 213
ENST00000523339 NPM1-006 retained_intron Homo_sapiens 0 230
ENST00000523622 NPM1-007 protein_coding Homo_sapiens 8e-33 143
ENST00000524204 NPM1-012 retained_intron Homo_sapiens 0 564
ENST00000532878 NPM1P50-001 processed_pseudogene Homo_sapiens 0 512
ENST00000533043 NPM1P35-001 processed_pseudogene Homo_sapiens 0 580
ENST00000557228 NPM1P5-001 processed_pseudogene Homo_sapiens 0 532
ENST00000560329 NPM1P42-001 processed_pseudogene Homo_sapiens 0 252
ENST00000564888 RP11-382N13.3-001 processed_pseudogene Homo_sapiens 0 481
ENST00000578162 NPM1P2-001 processed_pseudogene Homo_sapiens 0 496
ENST00000583151 NPM1P45-001 processed_pseudogene Homo_sapiens 0 444
ENST00000588959 RP11-188I24.1-001 processed_pseudogene Homo_sapiens 0 283

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