C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCCTC-binding factor (zinc finger protein)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094287 Ctcfl-001 ENSMUSG00000070495 10090 - 2:173093609-173119525 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000094287
Transcript ID Bladder Brain Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000094287 0.162±0.00 0.348±0.20 0.276±0.00 0.045±0.00 0.129±0.11 0.085±0.05 0.248±0.17 0.220±0.19 0.419±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525
CIL_0005JC CIL_0005JC_0002 CGP 2:173093609-173159273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006349 IDA regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0010628 IEA positive regulation of gene expression
GO:0016571 IDA histone methylation
GO:0042393 IDA histone binding
GO:0043046 IDA DNA methylation involved in gamete generation
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051569 IEA regulation of histone H3-K4 methylation

Homologs

No Homologs available.

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