C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094756 Rbm47-005 ENSMUSG00000070780 10090 - 5:66018751-66098179 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000094756
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000094756 7.395±3.54 7.718±0.11 0.117±0.00 6.770±1.56 26.367±2.84 0.457±0.16 13.474±1.30 4.611±1.09 0.049±0.00 8.819±4.38 5.833±2.46 2.087±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0002 CGP 5:66016549-66298016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110698 rbm46-001 protein_coding Danio_rerio 0 231
ENST00000295971 RBM47-006 protein_coding Homo_sapiens 0 2326
ENST00000381793 RBM47-001 protein_coding Homo_sapiens 0 2318
ENST00000381795 RBM47-002 protein_coding Homo_sapiens 0 1437
ENST00000505220 RBM47-010 protein_coding Homo_sapiens 0 270
ENST00000505414 RBM47-009 protein_coding Homo_sapiens 0 621
ENST00000507180 RBM47-014 protein_coding Homo_sapiens 0 505
ENST00000510871 RBM47-007 nonsense_mediated_decay Homo_sapiens 0 1443
ENST00000511598 RBM47-008 protein_coding Homo_sapiens 0 466
ENST00000511902 RBM47-012 protein_coding Homo_sapiens 0 267
ENST00000513473 RBM47-015 protein_coding Homo_sapiens 0 702
ENST00000514014 RBM47-005 protein_coding Homo_sapiens 0 2156
ENST00000514782 RBM47-013 protein_coding Homo_sapiens 0 558
ENST00000515053 RBM47-011 protein_coding Homo_sapiens 0 832

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