C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor, beta receptor associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095014 Tgfbrap1-001 ENSMUSG00000070939 10090 - 1:43047200-43098622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095014
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095014 2.101±0.14 9.385±2.62 2.036±0.39 2.441±0.90 3.089±1.56 2.759±0.92 0.864±0.12 2.276±0.34 1.538±1.27 3.230±0.65 0.619±0.15 4.490±1.99 1.984±0.86 1.773±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096O CIL_00096O_0002 VISTA 1:42588323-43189246
CIL_0003Y3 CIL_0003Y3_0002 CGP 1:42952872-43098637
CIL_0003Y4 CIL_0003Y4_0002 CGP 1:43047200-43115947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005160 IEA transforming growth factor beta receptor binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006886 IEA intracellular protein transport
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0046332 IEA SMAD binding
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258449 TGFBRAP1-201 protein_coding Homo_sapiens 0 2806
ENST00000393359 TGFBRAP1-001 protein_coding Homo_sapiens 0 2806
ENST00000595531 TGFBRAP1-202 protein_coding Homo_sapiens 0 2806

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