C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095027 Aff3-002 ENSMUSG00000037138 10090 - 1:38177326-38627185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095027
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095027 1.081±0.53 0.589±0.17 11.809±3.66 2.774±1.97 0.180±0.00 0.443±0.12 0.369±0.23 0.139±0.08 4.998±2.17 0.204±0.18 6.743±2.67 0.282±0.24 0.748±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N7 CIL_0007N7_0003 UCNEbase 1:38052781-38449781
CIL_000346 CIL_000346_0002 CGP 1:38052787-38664955
CIL_0004HL CIL_0004HL_0002 CGP 1:38177326-38836090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003690 IEA double-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 TAS transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0034612 IEA response to tumor necrosis factor
GO:0035116 IEA embryonic hindlimb morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317233 AFF3-201 protein_coding Homo_sapiens 0 2333
ENST00000409236 AFF3-001 protein_coding Homo_sapiens 0 2333
ENST00000409579 AFF3-002 protein_coding Homo_sapiens 0 2183
ENST00000415384 AFF3-009 protein_coding Homo_sapiens 3e-35 152
ENST00000416492 AFF3-005 protein_coding Homo_sapiens 0 435
ENST00000423966 AFF3-003 protein_coding Homo_sapiens 0 590
ENST00000424600 AFF3-006 protein_coding Homo_sapiens 0 483
ENST00000427118 AFF3-010 protein_coding Homo_sapiens 3e-35 152
ENST00000432037 AFF3-014 protein_coding Homo_sapiens 0 608
ENST00000440445 AFF3-008 protein_coding Homo_sapiens 0 207
ENST00000441400 AFF3-007 protein_coding Homo_sapiens 0 508
ENST00000445815 AFF3-015 protein_coding Homo_sapiens 0 547
ENST00000498090 AFF3-013 retained_intron Homo_sapiens 0 780

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