C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box E1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095097 Foxe1-001 ENSMUSG00000070990 10090 + 4:46343609-46346412 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000095097
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000095097 0.097±0.03 0.004±0.00 0.011±0.00 0.017±0.00 0.027±0.01 0.022±0.01 0.199±0.27 0.050±0.02 0.017±0.01 0.019±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_00029U CIL_00029U_0002 CGP 4:46155347-46346412
CIL_00029R CIL_00029R_0002 CGP 4:46343609-46389437

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISO negative regulation of transcription from RNA polymerase II promoter
GO:0000981 ISO sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 ISO DNA binding
GO:0005634 IEA nucleus
GO:0006590 IMP thyroid hormone generation
GO:0016477 IMP cell migration
GO:0030878 IMP thyroid gland development
GO:0031069 IMP hair follicle morphogenesis
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0048538 IEA thymus development
GO:0048562 IMP embryonic organ morphogenesis
GO:0060022 IEA hard palate development
GO:0060023 IEA soft palate development
GO:0060465 IEA pharynx development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320354 FOXC2-001 protein_coding Homo_sapiens 0 211
ENST00000375123 FOXE1-001 protein_coding Homo_sapiens 0 1177

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