C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097014 Tuba1a-001 ENSMUSG00000072235 10090 - 15:98949841-98953551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097014
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097014 222.843±78.52 49.868±9.27 103.873±26.89 162.632±0.00 133.223±48.85 69.112±2.55 33.293±8.45 27.828±0.99 18.867±30.33 204.933±16.20 9.483±1.51 167.939±61.16 106.421±24.27 22.765±3.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000B CIL_00000B_0002 CGP 15:98931425-98953551

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005881 IDA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0019904 IEA protein domain specific binding
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1559
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1548
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1500
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 1367
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1280
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 1190
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 1160
ENSDART00000115157 tuba4l-201 protein_coding Danio_rerio 0 959
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 632
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 409
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 368
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 348
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1472
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 2067
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 2294
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 1912
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1386
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1415
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 2019
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 2025
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1463
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 590
ENST00000425085 TUBAP-001 processed_pseudogene Homo_sapiens 0 1094
ENST00000437364 RP11-346M5.1-001 processed_pseudogene Homo_sapiens 0 1107
ENST00000437634 AC012501.3-001 transcribed_processed_pseudogene Homo_sapiens 0 896
ENST00000445574 RP11-184J23.2-001 processed_pseudogene Homo_sapiens 0 1114
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 0 889
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 1238
ENST00000490341 TUBA4B-001 processed_transcript Homo_sapiens 0 1033
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 795
ENST00000501221 RP11-447H19.1-001 processed_pseudogene Homo_sapiens 0 1535
ENST00000505780 CTD-2158P22.4-001 processed_pseudogene Homo_sapiens 0 510
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 616
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 1855
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 1906
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 728
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 514
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 2019
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 1109
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 0 569
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 1528
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 0 564
ENST00000549554 TUBA1C-005 processed_transcript Homo_sapiens 6e-33 145
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 547
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 0 394
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 645
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 2025
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0 298
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 355
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 1906
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 654
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 392
ENST00000559595 RP11-522B15.6-001 processed_pseudogene Homo_sapiens 0 477
ENST00000559655 RP11-83J16.3-001 processed_pseudogene Homo_sapiens 0 536
ENST00000569261 TUBA8P2-001 transcribed_processed_pseudogene Homo_sapiens 0 379
ENST00000611325 RP11-386G11.11-001 processed_pseudogene Homo_sapiens 0 244

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