C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: expressed sequence AW554918
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097643 AW554918-201 ENSMUSG00000033632 10090 + 18:25169020-25467321 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000097643
Transcript ID Adipose Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000097643 0.663±0.00 2.386±0.03 2.217±0.80 0.679±0.36 1.060±0.38 0.691±0.13 2.638±0.73 1.252±0.52 2.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VO CIL_0003VO_0002 CGP 18:24709445-25169007
CIL_0008E2 CIL_0008E2_0002 VISTA 18:24940595-25541640
CIL_00092R CIL_00092R_0002 VISTA 18:25077370-25678646
CIL_0002FL CIL_0002FL_0003 CGP 18:25127223-25467321
CIL_0002FC CIL_0002FC_0003 CGP 18:25168999-25753983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280020 KIAA1328-001 protein_coding Homo_sapiens 0 1037
ENST00000477323 RP11-529G21.3-001 processed_pseudogene Homo_sapiens 0 597
ENST00000586135 KIAA1328-006 protein_coding Homo_sapiens 0 610
ENST00000586501 KIAA1328-007 protein_coding Homo_sapiens 0 394
ENST00000587139 KIAA1328-008 protein_coding Homo_sapiens 0 1177
ENST00000590617 KIAA1328-004 nonsense_mediated_decay Homo_sapiens 0 1051
ENST00000591619 KIAA1328-005 protein_coding Homo_sapiens 0 977
ENST00000592521 KIAA1328-003 protein_coding Homo_sapiens 0 505
ENST00000592611 KIAA1328-002 nonsense_mediated_decay Homo_sapiens 0 688
ENST00000599493 KIAA1328-012 retained_intron Homo_sapiens 0 250
ENST00000601437 KIAA1328-011 processed_transcript Homo_sapiens 0 191

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