C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, U
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097860 Ptpru-004 ENSMUSG00000028909 10090 - 4:131783228-131821516 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000097860
Transcript ID Breast
ENSMUST00000097860 0.155±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008013 IPI beta-catenin binding
GO:0016020 IEA membrane
GO:0034109 IDA homotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083939 PTPRU (3 of 3)-202 protein_coding Danio_rerio 0 196
ENSDART00000036656 PTPRU (3 of 3)-201 protein_coding Danio_rerio 0 196
ENST00000345512 PTPRU-003 protein_coding Homo_sapiens 0 3205
ENST00000373779 PTPRU-001 protein_coding Homo_sapiens 0 2604
ENST00000415600 PTPRU-006 processed_transcript Homo_sapiens 0 1419
ENST00000428026 PTPRU-008 protein_coding Homo_sapiens 0 2604
ENST00000460170 PTPRU-002 protein_coding Homo_sapiens 0 2604
ENST00000527027 PTPRU-009 processed_transcript Homo_sapiens 0 667
ENST00000531385 PTPRU-010 retained_intron Homo_sapiens 0 243

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