C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098015 Itgam-001 ENSMUSG00000030786 10090 + 7:128062683-128128160 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000098015
Transcript ID Muscle
ENSMUST00000098015 0.030±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035O CIL_00035O_0002 CGP 7:128062640-128150656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001846 IDA opsonin binding
GO:0002523 IMP leukocyte migration involved in inflammatory response
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0007155 IMP cell adhesion
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008201 IDA heparin binding
GO:0008305 IEA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0014005 IDA microglia development
GO:0016021 IDA integral component of membrane
GO:0016337 IGI single organismal cell-cell adhesion
GO:0030593 IMP neutrophil chemotaxis
GO:0043395 IDA heparan sulfate proteoglycan binding
GO:0045123 IMP cellular extravasation
GO:0050798 IMP activated T cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287497 ITGAM-002 protein_coding Homo_sapiens 0 2348
ENST00000348462 RPL35-001 protein_coding Homo_sapiens 0 302
ENST00000373570 RPL35-005 protein_coding Homo_sapiens 2e-31 139
ENST00000402419 RPL35P2-001 processed_pseudogene Homo_sapiens 0 241
ENST00000403133 RPL35P3-001 processed_pseudogene Homo_sapiens 8.40779e-45 183
ENST00000433284 RPL35P8-001 processed_pseudogene Homo_sapiens 1e-32 143
ENST00000433398 RPL35P5-001 processed_pseudogene Homo_sapiens 0 270
ENST00000446039 RPL35P4-001 processed_pseudogene Homo_sapiens 0 215
ENST00000450819 RPL35P1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000487431 RPL35-004 retained_intron Homo_sapiens 0 292
ENST00000493018 RPL35-003 nonsense_mediated_decay Homo_sapiens 3e-32 143
ENST00000544665 ITGAM-001 protein_coding Homo_sapiens 0 2335
ENST00000567031 ITGAM-003 protein_coding Homo_sapiens 0 368
ENST00000588562 AC005262.4-001 processed_pseudogene Homo_sapiens 0 204

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