C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arrestin, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098266 Arrb1-001 ENSMUSG00000018909 10090 + 7:99535466-99606771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098266
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098266 17.975±1.00 5.476±2.07 15.223±0.82 14.854±7.11 14.480±3.46 14.370±4.04 3.428±0.59 11.562±3.75 25.483±26.80 52.324±0.65 2.280±0.70 6.652±3.29 9.930±5.95 2.473±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0002 VISTA 7:99059661-99661402
CIL_0008I3 CIL_0008I3_0002 VISTA 7:99464975-100069320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0001934 ISS positive regulation of protein phosphorylation
GO:0002031 IEA G-protein coupled receptor internalization
GO:0002092 ISS positive regulation of receptor internalization
GO:0005096 IEA GTPase activator activity
GO:0005159 IEA insulin-like growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0005905 IEA coated pit
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007602 IMP phototransduction
GO:0008134 IEA transcription factor binding
GO:0008277 IMP regulation of G-protein coupled receptor protein signaling pathway
GO:0015031 IEA protein transport
GO:0016567 IEA protein ubiquitination
GO:0031143 IDA pseudopodium
GO:0031397 IEA negative regulation of protein ubiquitination
GO:0031410 IEA cytoplasmic vesicle
GO:0031434 IDA mitogen-activated protein kinase kinase binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0031701 IEA angiotensin receptor binding
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0032092 IMP positive regulation of protein binding
GO:0032715 IEA negative regulation of interleukin-6 production
GO:0032717 IEA negative regulation of interleukin-8 production
GO:0033138 IMP positive regulation of peptidyl-serine phosphorylation
GO:0035025 IEA positive regulation of Rho protein signal transduction
GO:0035066 IEA positive regulation of histone acetylation
GO:0035774 IMP positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0043027 IMP cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0043149 IEA stress fiber assembly
GO:0043154 IMP negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043547 IEA positive regulation of GTPase activity
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070374 IMP positive regulation of ERK1 and ERK2 cascade
GO:0090240 IEA positive regulation of histone H4 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360025 ARRB1-002 protein_coding Homo_sapiens 0 1759
ENST00000420843 ARRB1-001 protein_coding Homo_sapiens 0 1892
ENST00000524400 ARRB1-004 nonsense_mediated_decay Homo_sapiens 0 634
ENST00000527385 ARRB1-007 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000529280 ARRB1-009 retained_intron Homo_sapiens 0 374
ENST00000532447 ARRB1-012 protein_coding Homo_sapiens 0 595
ENST00000532525 ARRB1-006 protein_coding Homo_sapiens 0 989
ENST00000533255 ARRB1-008 retained_intron Homo_sapiens 0 621
ENST00000533609 ARRB1-005 nonsense_mediated_decay Homo_sapiens 0 630

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