C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 9387
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098624 Gm9387-201 ENSMUSG00000074236 10090 - 3:128953782-128955098 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverTestisENSMUST00000098624
Transcript ID Adipose Bladder Breast Kidney Liver Testis
ENSMUST00000098624 0.023±0.00 0.063±0.00 0.026±0.00 0.037±0.01 0.016±0.01 0.056±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P9 CIL_0007P9_0002 UCNEbase 3:127625906-129219414
CIL_0007ZK CIL_0007ZK_0002 VISTA 3:128368526-128970000
CIL_0007RM CIL_0007RM_0002 VISTA 3:128419110-129020731
CIL_0008B5 CIL_0008B5_0002 VISTA 3:128549319-129152007
CIL_0007RD CIL_0007RD_0002 VISTA 3:128625921-129227117
CIL_0007ZJ CIL_0007ZJ_0002 VISTA 3:128803805-129405710
CIL_000912 CIL_000912_0002 VISTA 3:128878432-129478935
CIL_000917 CIL_000917_0002 VISTA 3:128927194-129527766

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258821 TTC5-001 protein_coding Homo_sapiens 0 1389
ENST00000383029 TTC5-002 nonsense_mediated_decay Homo_sapiens 0 974
ENST00000554157 TTC5-004 retained_intron Homo_sapiens 0 1157
ENST00000557379 TTC5-006 retained_intron Homo_sapiens 0 420

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