C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099514 Sgms1-001 ENSMUSG00000040451 10090 - 19:32122727-32388512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000099514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000099514 4.381±0.63 3.119±0.39 5.486±0.36 2.266±0.25 1.908±0.28 2.963±0.89 3.717±1.07 3.904±0.75 2.924±1.46 4.607±0.46 7.515±1.37 6.143±2.23 5.052±2.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IG CIL_0000IG_0002 CGP 19:31984654-32389714

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000138 ISA Golgi trans cisterna
GO:0005634 TAS nucleus
GO:0005783 TAS endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006686 ISS sphingomyelin biosynthetic process
GO:0006915 IEA apoptotic process
GO:0016049 IDA cell growth
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030173 ISS integral component of Golgi membrane
GO:0033188 IMP sphingomyelin synthase activity
GO:0047493 ISS ceramide cholinephosphotransferase activity
GO:2001237 IDA negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361543 SGMS1-201 protein_coding Homo_sapiens 0 1053
ENST00000361781 SGMS1-003 protein_coding Homo_sapiens 0 3406
ENST00000429490 SGMS1-202 protein_coding Homo_sapiens 0 2056
ENST00000602619 SGMS1-005 protein_coding Homo_sapiens 0 285
ENST00000619438 SGMS1-203 protein_coding Homo_sapiens 0 1140

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