C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100484 Eif3d-201 ENSMUSG00000016554 10090 - 15:77958998-77970824 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100484 39.019±7.56 17.970±2.73 35.871±11.11 51.317±8.71 26.992±4.02 27.506±2.52 15.880±0.40 22.657±2.02 54.184±38.03 22.018±3.94 19.991±0.97 58.280±17.33 60.395±34.35 36.678±9.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GX CIL_0003GX_0002 CGP 15:77940522-77970824
CIL_0005SO CIL_0005SO_0002 CGP 15:77958998-78120028

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0001732 IDA formation of cytoplasmic translation initiation complex
GO:0003743 IDA translation initiation factor activity
GO:0005515 IEA protein binding
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0006446 IEA regulation of translational initiation
GO:0016020 IEA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044822 IEA poly(A) RNA binding
GO:0071541 IDA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132298 eif3d-001 protein_coding Danio_rerio 0 1384
ENSDART00000011052 eif3d-201 protein_coding Danio_rerio 0 1362
ENSDART00000150898 eif3d-005 nonsense_mediated_decay Danio_rerio 0 375
ENST00000216190 EIF3D-001 protein_coding Homo_sapiens 0 2268
ENST00000402116 EIF3D-007 protein_coding Homo_sapiens 0 497
ENST00000405442 EIF3D-002 protein_coding Homo_sapiens 0 2246
ENST00000426531 EIF3D-009 retained_intron Homo_sapiens 0 819
ENST00000432675 EIF3D-003 protein_coding Homo_sapiens 0 632
ENST00000455547 EIF3D-005 protein_coding Homo_sapiens 0 1070
ENST00000457241 EIF3D-006 protein_coding Homo_sapiens 0 680
ENST00000458572 EIF3D-010 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000462641 EIF3D-012 retained_intron Homo_sapiens 0 641
ENST00000462794 EIF3D-008 retained_intron Homo_sapiens 0 300
ENST00000478547 EIF3D-011 processed_transcript Homo_sapiens 0 202
ENST00000496875 EIF3D-004 retained_intron Homo_sapiens 0 226

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