C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101004 Per1-003 ENSMUSG00000020893 10090 + 11:69095217-69106458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101004
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101004 4.359±2.06 6.929±2.37 3.008±0.68 1.006±0.21 4.661±1.75 2.000±0.80 2.451±1.19 1.155±0.00 0.717±0.66 9.766±5.84 2.394±1.25 4.202±2.39 2.894±1.71 14.348±1.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007165 IEA signal transduction
GO:0007623 TAS circadian rhythm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000079459 per1a-201 protein_coding Danio_rerio 0.000000008 68
ENSDART00000100468 per1a-001 protein_coding Danio_rerio 0.000000008 68
ENST00000254657 PER2-001 protein_coding Homo_sapiens 2e-16 94
ENST00000317276 PER1-001 protein_coding Homo_sapiens 0 3142
ENST00000354903 PER1-002 protein_coding Homo_sapiens 0 3061
ENST00000577253 PER1-008 protein_coding Homo_sapiens 0 388
ENST00000577424 PER1-013 retained_intron Homo_sapiens 8e-27 124
ENST00000578089 PER1-015 processed_transcript Homo_sapiens 0 418
ENST00000578223 PER1-011 retained_intron Homo_sapiens 0 693
ENST00000578950 PER1-018 retained_intron Homo_sapiens 0 318
ENST00000579065 PER1-004 retained_intron Homo_sapiens 0 1118
ENST00000581082 PER1-005 protein_coding Homo_sapiens 0 2187
ENST00000581395 PER1-003 nonsense_mediated_decay Homo_sapiens 0 2113
ENST00000581703 PER1-009 protein_coding Homo_sapiens 0 592
ENST00000582719 PER1-006 nonsense_mediated_decay Homo_sapiens 0 3138
ENST00000583559 PER1-016 protein_coding Homo_sapiens 0 436
ENST00000584202 PER1-010 protein_coding Homo_sapiens 0 479
ENST00000585095 PER1-014 retained_intron Homo_sapiens 0 219

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