C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102525 Arpc3-001 ENSMUSG00000029465 10090 + 5:122391878-122406179 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102525 68.350±12.73 44.429±16.11 80.701±13.32 61.988±35.33 34.125±18.18 86.649±19.92 38.009±5.60 51.704±16.86 70.627±34.53 57.796±14.35 30.100±1.92 45.340±10.75 110.123±16.03 13.339±5.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0004MV CIL_0004MV_0002 CGP 5:122371876-122406179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0005925 IEA focal adhesion
GO:0016020 IEA membrane
GO:0030027 IDA lamellipodium
GO:0034314 IEA Arp2/3 complex-mediated actin nucleation
GO:0051015 IEA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228825 ARPC3-001 protein_coding Homo_sapiens 0 623
ENST00000397300 RP11-680H20.1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000437218 ARPC3P1-001 processed_pseudogene Homo_sapiens 0 503
ENST00000448802 ARPC3P5-001 processed_pseudogene Homo_sapiens 0 532
ENST00000457786 ARPC3P2-001 processed_pseudogene Homo_sapiens 0 479
ENST00000467622 ARPC3-006 retained_intron Homo_sapiens 0 207

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