C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 39b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102588 Tmem39b-001 ENSMUSG00000053730 10090 - 4:129676355-129696838 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102588 5.487±1.96 4.035±1.60 6.084±0.78 16.215±2.81 4.674±1.40 4.995±1.49 2.261±0.56 6.128±0.87 3.902±2.29 3.377±0.52 1.031±0.38 10.685±5.34 7.162±4.47 17.794±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336294 TMEM39B-001 protein_coding Homo_sapiens 0 2287
ENST00000438825 TMEM39B-009 protein_coding Homo_sapiens 0 595
ENST00000441402 TMEM39B-003 nonsense_mediated_decay Homo_sapiens 0 1295
ENST00000466321 TMEM39B-005 processed_transcript Homo_sapiens 0 900
ENST00000468135 TMEM39B-004 processed_transcript Homo_sapiens 0 1683
ENST00000472503 TMEM39B-006 processed_transcript Homo_sapiens 0 1033
ENST00000476968 TMEM39B-008 processed_transcript Homo_sapiens 0 1539
ENST00000487305 TMEM39B-002 processed_transcript Homo_sapiens 0 2108
ENST00000498613 TMEM39B-007 processed_transcript Homo_sapiens 0 1062

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