C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syncoilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102599 Sync-001 ENSMUSG00000001333 10090 + 4:129287617-129308559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartMuscleOvaryPlacentaENSMUST00000102599
Transcript ID Colon Heart Muscle Ovary Placenta
ENSMUST00000102599 2.551±0.00 4.891±0.00 8.873±0.00 4.124±0.33 10.488±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A9 CIL_0002A9_0002 CGP 4:129219578-129308559
CIL_0002A8 CIL_0002A8_0002 CGP 4:129287617-129335370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005882 ISS intermediate filament
GO:0030018 IDA Z disc
GO:0031594 IDA neuromuscular junction
GO:0042383 IDA sarcolemma
GO:0045103 IDA intermediate filament-based process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373484 SYNC-004 protein_coding Homo_sapiens 1e-39 169
ENST00000409190 SYNC-001 protein_coding Homo_sapiens 0 195

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