C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fas-associated factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102724 Faf1-001 ENSMUSG00000010517 10090 + 4:109676588-109963960 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102724
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102724 6.592±0.33 6.661±3.27 2.817±0.58 6.988±2.82 7.047±2.58 9.296±3.76 5.574±0.40 5.124±1.67 3.296±1.06 6.087±1.20 9.342±3.53 10.975±3.54 10.351±6.46 7.216±2.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AC CIL_0009AC_0002 VISTA 4:109462244-110063771
CIL_0008US CIL_0008US_0002 VISTA 4:109505979-110107022
CIL_0008UT CIL_0008UT_0002 VISTA 4:109558711-110160443
CIL_0008K0 CIL_0008K0_0002 VISTA 4:109582013-110183287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0006915 IEA apoptotic process
GO:0007253 ISS cytoplasmic sequestering of NF-kappaB
GO:0008219 ISS cell death
GO:0019901 ISS protein kinase binding
GO:0019904 IPI protein domain specific binding
GO:0030155 IMP regulation of cell adhesion
GO:0031072 ISS heat shock protein binding
GO:0031334 ISS positive regulation of protein complex assembly
GO:0031625 IEA ubiquitin protein ligase binding
GO:0034098 IEA Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0042176 ISS regulation of protein catabolic process
GO:0043130 IEA ubiquitin binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051059 IEA NF-kappaB binding
GO:1902043 IDA positive regulation of extrinsic apoptotic signaling pathway via death domain receptors

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000034004 faf1-001 protein_coding Danio_rerio 0 584
ENSDART00000115419 faf1-201 protein_coding Danio_rerio 0 577
ENST00000371778 FAF1-201 protein_coding Homo_sapiens 0 1537
ENST00000396153 FAF1-001 protein_coding Homo_sapiens 0 3441
ENST00000472808 FAF1-005 processed_transcript Homo_sapiens 0 1000
ENST00000487898 FAF1-004 processed_transcript Homo_sapiens 0 894
ENST00000494400 FAF1-002 nonsense_mediated_decay Homo_sapiens 0 1930

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