C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102787 Dennd1a-001 ENSMUSG00000035392 10090 - 2:37798991-38287375 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102787
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102787 3.719±0.45 5.022±0.49 3.454±0.41 6.129±1.69 3.536±1.50 2.330±0.87 1.969±0.20 6.359±1.35 2.426±0.76 3.403±1.19 1.216±0.52 3.972±1.82 5.783±2.70 4.729±2.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WP CIL_0006WP_0002 CGP 2:37776249-38287390
CIL_0006WO CIL_0006WO_0002 CGP 2:37798991-38369733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0006897 ISS endocytosis
GO:0015031 IEA protein transport
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0017124 IPI SH3 domain binding
GO:0030054 IEA cell junction
GO:0030136 IDA clathrin-coated vesicle
GO:0030425 IDA dendrite
GO:0030665 IDA clathrin-coated vesicle membrane
GO:0032483 IEA regulation of Rab protein signal transduction
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0043025 IDA neuronal cell body
GO:0045202 IDA synapse
GO:0048488 IDA synaptic vesicle endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373618 DENND1A-003 protein_coding Homo_sapiens 0 1705
ENST00000373620 DENND1A-004 protein_coding Homo_sapiens 0 2327
ENST00000373624 DENND1A-002 protein_coding Homo_sapiens 0 3502
ENST00000394215 DENND1A-201 protein_coding Homo_sapiens 0 1578
ENST00000394219 DENND1A-202 protein_coding Homo_sapiens 0 2782
ENST00000460253 CRB2-002 nonsense_mediated_decay Homo_sapiens 3e-18 99
ENST00000473039 DENND1A-007 processed_transcript Homo_sapiens 0 1205
ENST00000474676 DENND1A-005 processed_transcript Homo_sapiens 0 691
ENST00000475615 DENND1A-006 processed_transcript Homo_sapiens 0 254
ENST00000479305 DENND1A-010 processed_transcript Homo_sapiens 0 549
ENST00000491650 DENND1A-001 processed_transcript Homo_sapiens 0 333
ENST00000497135 DENND1A-009 processed_transcript Homo_sapiens 0 773

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