C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: L1 cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102871 L1cam-001 ENSMUSG00000031391 10090 - X:73853955-73880834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLungENSMUST00000102871
Transcript ID Adrenal Brain Colon Kidney Lung
ENSMUST00000102871 1.963±0.13 27.774±17.11 8.553±2.69 4.895±1.09 5.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001US CIL_0001US_0002 CGP X:73793359-73896105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IDA integrin binding
GO:0005515 IPI protein binding
GO:0005925 IEA focal adhesion
GO:0007156 IMP homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IMP heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007411 IMP axon guidance
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0022409 IMP positive regulation of cell-cell adhesion
GO:0031175 IDA neuron projection development
GO:0033631 IMP cell-cell adhesion mediated by integrin
GO:0033691 IDA sialic acid binding
GO:0034109 IMP homotypic cell-cell adhesion
GO:0042734 IDA presynaptic membrane
GO:0042802 IDA identical protein binding
GO:0043195 IDA terminal bouton
GO:0043621 IPI protein self-association
GO:0050850 IDA positive regulation of calcium-mediated signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361699 L1CAM-002 protein_coding Homo_sapiens 0 3923
ENST00000361981 L1CAM-201 protein_coding Homo_sapiens 0 3842
ENST00000370055 L1CAM-006 protein_coding Homo_sapiens 0 3842
ENST00000370058 L1CAM-003 protein_coding Homo_sapiens 0 326
ENST00000370060 L1CAM-001 protein_coding Homo_sapiens 0 4000
ENST00000407935 L1CAM-017 protein_coding Homo_sapiens 0 368
ENST00000420165 L1CAM-008 protein_coding Homo_sapiens 0 246
ENST00000439496 L1CAM-011 protein_coding Homo_sapiens 0 510
ENST00000455590 L1CAM-007 protein_coding Homo_sapiens 0 448
ENST00000458029 L1CAM-010 protein_coding Homo_sapiens 0 326
ENST00000460553 L1CAM-009 retained_intron Homo_sapiens 2e-28 130
ENST00000464967 L1CAM-016 retained_intron Homo_sapiens 0 364
ENST00000474853 L1CAM-014 retained_intron Homo_sapiens 0 418
ENST00000491983 L1CAM-015 retained_intron Homo_sapiens 0 259
ENST00000496122 L1CAM-013 retained_intron Homo_sapiens 0 455

Loading