C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear protein localization 4 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103017 Nploc4-002 ENSMUSG00000039703 10090 - 11:120380370-120437708 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastOvaryTestisENSMUST00000103017
Transcript ID Adrenal Brain Breast Ovary Testis
ENSMUST00000103017 4.794±0.72 5.580±0.00 4.097±0.00 8.408±1.29 5.237±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BK CIL_0003BK_0002 CGP 11:120369055-120437708
CIL_0002HY CIL_0002HY_0002 CGP 11:120380370-120446950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 ISS endoplasmic reticulum
GO:0007030 ISS Golgi organization
GO:0008270 IEA zinc ion binding
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0042175 ISS nuclear outer membrane-endoplasmic reticulum membrane network
GO:0061025 ISS membrane fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331134 NPLOC4-001 protein_coding Homo_sapiens 0 1930
ENST00000374747 NPLOC4-002 protein_coding Homo_sapiens 0 1873
ENST00000570300 NPLOC4-013 processed_transcript Homo_sapiens 0 457
ENST00000570324 NPLOC4-014 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000571714 NPLOC4-017 protein_coding Homo_sapiens 0 202
ENST00000572346 NPLOC4-006 processed_transcript Homo_sapiens 0 322
ENST00000572351 NPLOC4-015 processed_transcript Homo_sapiens 0 472
ENST00000572760 NPLOC4-004 protein_coding Homo_sapiens 0 326
ENST00000572824 NPLOC4-008 protein_coding Homo_sapiens 0 427
ENST00000573328 NPLOC4-012 retained_intron Homo_sapiens 0 462
ENST00000573519 NPLOC4-016 protein_coding Homo_sapiens 0 202
ENST00000573876 NPLOC4-005 protein_coding Homo_sapiens 0 324
ENST00000574344 NPLOC4-010 processed_transcript Homo_sapiens 0 595
ENST00000574897 NPLOC4-003 nonsense_mediated_decay Homo_sapiens 0 1218
ENST00000574964 NPLOC4-019 processed_transcript Homo_sapiens 0 202
ENST00000576713 NPLOC4-007 retained_intron Homo_sapiens 3e-25 119

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