C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid 5 homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103029 Rhbdf2-003 ENSMUSG00000020806 10090 - 11:116598165-116624200 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103029
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103029 8.794±0.90 13.882±3.98 4.901±0.56 0.314±0.16 14.002±0.19 10.292±3.44 4.859±0.78 4.566±0.98 5.371±1.72 24.608±4.07 4.780±1.84 21.124±9.71 4.609±2.17 1.040±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_0007EV CIL_0007EV_0002 CGP 11:116586432-116627019
CIL_0000CA CIL_0000CA_0002 CGP 11:116598165-116654313

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006508 IEA proteolysis
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0050709 IDA negative regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313080 RHBDF2-001 protein_coding Homo_sapiens 0 2763
ENST00000427504 RHBDF1P1-001 processed_pseudogene Homo_sapiens 0 518
ENST00000585701 RHBDF2-016 protein_coding Homo_sapiens 6e-38 161
ENST00000585989 RHBDF2-010 protein_coding Homo_sapiens 0 375
ENST00000587640 RHBDF2-005 retained_intron Homo_sapiens 0 702
ENST00000589526 RHBDF2-013 protein_coding Homo_sapiens 0 309
ENST00000589582 RHBDF2-004 retained_intron Homo_sapiens 0 1469
ENST00000590168 RHBDF2-006 retained_intron Homo_sapiens 0 1362
ENST00000590288 RHBDF2-008 protein_coding Homo_sapiens 8e-18 95
ENST00000590322 RHBDF2-015 protein_coding Homo_sapiens 8e-22 108
ENST00000591192 RHBDF2-014 protein_coding Homo_sapiens 2e-37 159
ENST00000591697 RHBDF2-009 protein_coding Homo_sapiens 0 233
ENST00000591860 RHBDF2-020 protein_coding Homo_sapiens 0 335
ENST00000591879 RHBDF2-017 protein_coding Homo_sapiens 0 233
ENST00000591885 RHBDF2-002 protein_coding Homo_sapiens 0 2926
ENST00000592123 RHBDF2-012 protein_coding Homo_sapiens 2e-40 171
ENST00000592378 RHBDF2-019 processed_transcript Homo_sapiens 5.00264e-43 178

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