C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IX, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103059 Col9a3-201 ENSMUSG00000027570 10090 + 2:180598222-180622185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000103059
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000103059 0.127±0.07 0.029±0.00 0.289±0.00 11.349±0.56 0.527±0.23 0.141±0.08 0.095±0.03 0.044±0.02 0.334±0.23 0.222±0.05 0.070±0.03 0.277±0.16 3.296±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0002 CGP 2:180589245-180622189
CIL_0001O1 CIL_0001O1_0002 CGP 2:180597790-180642708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008584 IEP male gonad development
GO:0008585 IEP female gonad development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343916 COL9A3-001 protein_coding Homo_sapiens 0 1923
ENST00000463487 COL9A3-015 processed_transcript Homo_sapiens 0 457
ENST00000489045 COL9A3-004 processed_transcript Homo_sapiens 0 712

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