C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103152 Cdk5rap3-001 ENSMUSG00000018669 10090 - 11:96907426-96916496 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103152 17.757±0.57 12.219±2.13 17.024±0.00 17.055±2.00 13.391±1.18 35.206±0.00 6.176±1.18 20.081±0.78 21.703±2.88 11.897±0.56 6.680±1.56 32.673±4.33 22.355±6.14 29.909±6.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 ISS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0016020 IEA membrane
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0071569 ISO protein ufmylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338399 CDK5RAP3-001 protein_coding Homo_sapiens 0 1755
ENST00000445194 RP5-854E16.2-001 processed_pseudogene Homo_sapiens 0 1555
ENST00000536708 CDK5RAP3-010 protein_coding Homo_sapiens 0 1722
ENST00000577442 CDK5RAP3-020 retained_intron Homo_sapiens 0 276
ENST00000577664 CDK5RAP3-034 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000578018 CDK5RAP3-012 protein_coding Homo_sapiens 0 422
ENST00000578134 CDK5RAP3-024 processed_transcript Homo_sapiens 0 765
ENST00000578525 CDK5RAP3-025 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000578663 CDK5RAP3-031 processed_transcript Homo_sapiens 0 612
ENST00000578733 CDK5RAP3-015 retained_intron Homo_sapiens 0 241
ENST00000579175 CDK5RAP3-037 protein_coding Homo_sapiens 0 1002
ENST00000579605 CDK5RAP3-022 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000579632 CDK5RAP3-011 protein_coding Homo_sapiens 0 691
ENST00000579853 CDK5RAP3-014 retained_intron Homo_sapiens 0 276
ENST00000580287 CDK5RAP3-008 retained_intron Homo_sapiens 0 815
ENST00000580391 CDK5RAP3-003 nonsense_mediated_decay Homo_sapiens 0 1711
ENST00000580670 CDK5RAP3-009 nonsense_mediated_decay Homo_sapiens 0 1677
ENST00000581160 CDK5RAP3-023 processed_transcript Homo_sapiens 0 268
ENST00000581708 CDK5RAP3-021 processed_transcript Homo_sapiens 0 287
ENST00000582114 CDK5RAP3-030 retained_intron Homo_sapiens 0 329
ENST00000583182 CDK5RAP3-036 retained_intron Homo_sapiens 0 422
ENST00000583352 CDK5RAP3-017 protein_coding Homo_sapiens 0 619
ENST00000583697 CDK5RAP3-033 protein_coding Homo_sapiens 0 654
ENST00000584042 CDK5RAP3-018 retained_intron Homo_sapiens 0 241
ENST00000584063 CDK5RAP3-004 retained_intron Homo_sapiens 0 870
ENST00000584168 CDK5RAP3-006 retained_intron Homo_sapiens 0 870
ENST00000584525 CDK5RAP3-026 retained_intron Homo_sapiens 0 268
ENST00000584592 CDK5RAP3-035 processed_transcript Homo_sapiens 0 239
ENST00000584991 CDK5RAP3-002 nonsense_mediated_decay Homo_sapiens 0 1738
ENST00000585163 CDK5RAP3-005 retained_intron Homo_sapiens 0 1304

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