C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: src family associated phosphoprotein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103154 Skap1-001 ENSMUSG00000057058 10090 + 11:96464593-96758941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000103154
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000103154 0.200±0.13 0.637±0.21 0.633±0.00 0.368±0.26 3.258±1.14 0.437±0.26 0.104±0.00 0.597±0.12 0.110±0.05 0.795±0.38 0.770±0.37 0.046±0.00 0.427±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0019901 IEA protein kinase binding
GO:0019903 IEA protein phosphatase binding
GO:0032403 IEA protein complex binding
GO:0042169 IEA SH2 domain binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050852 IEA T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336915 SKAP1-001 protein_coding Homo_sapiens 0 1109
ENST00000579336 SKAP1-005 protein_coding Homo_sapiens 0 372
ENST00000579476 SKAP1-007 retained_intron Homo_sapiens 0 298
ENST00000581400 SKAP1-006 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000581419 SKAP1-004 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000584709 SKAP1-003 nonsense_mediated_decay Homo_sapiens 0 811
ENST00000584924 SKAP1-002 protein_coding Homo_sapiens 0 1099

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