C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitination factor E4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103212 Ube4b-001 ENSMUSG00000028960 10090 - 4:149328416-149426749 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103212 7.952±2.06 2.764±0.42 7.935±0.95 16.534±5.12 4.036±1.72 3.212±0.26 2.929±1.44 6.855±0.70 4.100±1.18 5.883±1.57 1.956±0.37 5.494±2.24 11.992±3.29 3.174±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IM CIL_0008IM_0002 VISTA 4:148744049-149345133
CIL_0006QX CIL_0006QX_0002 CGP 4:149176319-149426749

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IEA:TAS ubiquitin ligase complex
GO:0005737 IDA cytoplasm
GO:0006457 NAS protein folding
GO:0008626 ISS granzyme-mediated apoptotic signaling pathway
GO:0009411 ISS response to UV
GO:0016567 IEA protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0034450 IEA ubiquitin-ubiquitin ligase activity
GO:0042787 TAS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253251 UBE4B-002 protein_coding Homo_sapiens 0 5182
ENST00000343090 UBE4B-001 protein_coding Homo_sapiens 0 3807
ENST00000377153 UBE4B-005 protein_coding Homo_sapiens 0 628
ENST00000462658 UBE4B-008 retained_intron Homo_sapiens 0 315
ENST00000466379 UBE4B-003 retained_intron Homo_sapiens 0 710
ENST00000470736 UBE4B-011 protein_coding Homo_sapiens 0 821
ENST00000475795 UBE4B-007 processed_transcript Homo_sapiens 0 1096
ENST00000487244 UBE4B-004 retained_intron Homo_sapiens 0 662
ENST00000488228 UBE4B-009 nonsense_mediated_decay Homo_sapiens 0 368

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