C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23A, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000104925 Rpl23a-ps3-201 ENSMUSG00000078126 10090 + 14:34170655-34171168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000104925
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000104925 4.261±1.39 1.965±0.56 23.733±7.91 15.105±2.11 1.594±0.58 3.438±2.86 1.510±0.72 3.552±1.56 17.067±18.14 1.323±0.34 1.883±0.38 3.946±2.03 2.582±3.54 0.823±0.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008283 IEA cell proliferation
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332361 RP11-106A1.2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000355731 RPL23A-003 protein_coding Homo_sapiens 0 595
ENST00000394935 RPL23A-004 protein_coding Homo_sapiens 0 597
ENST00000394938 RPL23A-009 protein_coding Homo_sapiens 0 597
ENST00000395315 RPL23AP32-001 processed_pseudogene Homo_sapiens 0 448
ENST00000406913 RP11-129H15.3-001 processed_pseudogene Homo_sapiens 0 309
ENST00000416139 RP11-384C4.3-001 processed_pseudogene Homo_sapiens 0 549
ENST00000422514 RPL23A-001 protein_coding Homo_sapiens 0 641
ENST00000437246 AC005884.1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000437556 RPL23AP22-001 processed_pseudogene Homo_sapiens 0 298
ENST00000440453 RP11-170J3.2-001 processed_pseudogene Homo_sapiens 0 494
ENST00000446445 AC139452.2-001 processed_pseudogene Homo_sapiens 0 527
ENST00000453844 RPL23AP3-001 processed_pseudogene Homo_sapiens 0 540
ENST00000456160 AC009974.11-001 processed_pseudogene Homo_sapiens 0 486
ENST00000467573 RPL23AP12-001 processed_pseudogene Homo_sapiens 0 479
ENST00000469465 RPL23AP64-001 processed_pseudogene Homo_sapiens 0 274
ENST00000471152 RP11-3P17.3-001 processed_pseudogene Homo_sapiens 0 599
ENST00000471227 RPL23AP2-001 processed_pseudogene Homo_sapiens 0 564
ENST00000472628 RPL23A-006 protein_coding Homo_sapiens 0 599
ENST00000475608 RP11-16F15.1-001 processed_pseudogene Homo_sapiens 0 545
ENST00000479658 AC114752.2-001 processed_pseudogene Homo_sapiens 0 569
ENST00000484754 RP11-4H14.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000491601 RP11-58O9.1-001 processed_pseudogene Homo_sapiens 0 460
ENST00000492507 RPL23AP73-001 processed_pseudogene Homo_sapiens 0 377
ENST00000492925 RP11-413E6.1-001 processed_pseudogene Homo_sapiens 0 440
ENST00000496182 RPL23A-002 protein_coding Homo_sapiens 0 597
ENST00000498163 RP11-1149O23.1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000498752 RP11-472I20.1-001 processed_pseudogene Homo_sapiens 0 505
ENST00000569211 CTC-661I16.1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000576277 CTC-281F24.2-001 processed_pseudogene Homo_sapiens 0 193
ENST00000578181 RPL23A-011 protein_coding Homo_sapiens 0 532
ENST00000582736 RPL23A-008 retained_intron Homo_sapiens 0 289
ENST00000588044 RPL23AP77-001 processed_pseudogene Homo_sapiens 0 508
ENST00000592379 AD000091.3-001 processed_pseudogene Homo_sapiens 0 322
ENST00000623642 AL589822.1-201 pseudogene Homo_sapiens 0 536

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