C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 3940
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105087 Gm3940-001 ENSMUSG00000078291 10090 - 1:52090635-52091066 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverOvaryPlacentaTestisENSMUST00000105087
Transcript ID Adipose Bladder Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000105087 0.217±0.05 0.038±0.00 0.074±0.03 0.114±0.00 0.160±0.09 0.242±0.00 0.145±0.13 0.878±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AM CIL_0009AM_0002 VISTA 1:51779533-52380137
CIL_0002AL CIL_0002AL_0002 CGP 1:51987148-52161865

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332361 RP11-106A1.2-001 processed_pseudogene Homo_sapiens 0 357
ENST00000355731 RPL23A-003 protein_coding Homo_sapiens 0 394
ENST00000394935 RPL23A-004 protein_coding Homo_sapiens 0 394
ENST00000394938 RPL23A-009 protein_coding Homo_sapiens 0 394
ENST00000395315 RPL23AP32-001 processed_pseudogene Homo_sapiens 0 298
ENST00000406913 RP11-129H15.3-001 processed_pseudogene Homo_sapiens 0 270
ENST00000422514 RPL23A-001 protein_coding Homo_sapiens 0 394
ENST00000437246 AC005884.1-001 processed_pseudogene Homo_sapiens 0 377
ENST00000437556 RPL23AP22-001 processed_pseudogene Homo_sapiens 0 196
ENST00000440453 RP11-170J3.2-001 processed_pseudogene Homo_sapiens 0 315
ENST00000446445 AC139452.2-001 processed_pseudogene Homo_sapiens 0 355
ENST00000453844 RPL23AP3-001 processed_pseudogene Homo_sapiens 0 366
ENST00000467573 RPL23AP12-001 processed_pseudogene Homo_sapiens 0 327
ENST00000469465 RPL23AP64-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000471152 RP11-3P17.3-001 processed_pseudogene Homo_sapiens 0 394
ENST00000471227 RPL23AP2-001 processed_pseudogene Homo_sapiens 0 387
ENST00000472628 RPL23A-006 protein_coding Homo_sapiens 0 394
ENST00000475608 RP11-16F15.1-001 processed_pseudogene Homo_sapiens 0 366
ENST00000479658 AC114752.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000484754 RP11-4H14.1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000491601 RP11-58O9.1-001 processed_pseudogene Homo_sapiens 0 366
ENST00000492925 RP11-413E6.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000496182 RPL23A-002 protein_coding Homo_sapiens 0 394
ENST00000498163 RP11-1149O23.1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000498752 RP11-472I20.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000569211 CTC-661I16.1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000578181 RPL23A-011 protein_coding Homo_sapiens 0 370
ENST00000588044 RPL23AP77-001 processed_pseudogene Homo_sapiens 0 346
ENST00000592379 AD000091.3-001 processed_pseudogene Homo_sapiens 2e-34 148

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