C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H3d
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105105 Hist1h3d-001 ENSMUSG00000099583 10090 + 13:23575763-23576322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105105
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105105 6.032±3.23 2.094±0.52 1.511±0.07 16.408±12.02 5.096±2.27 13.306±1.64 1.290±0.26 0.696±0.14 18.817±23.74 2.830±0.73 1.128±0.11 11.563±7.80 10.444±10.51 1.392±0.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005654 ISS nucleoplasm
GO:0046982 IEA protein heterodimerization activity
GO:0060968 ISS regulation of gene silencing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000115062 si:ch211-113a14.14-201 protein_coding Danio_rerio 0 449
ENSDART00000133379 hist2h3c-001 protein_coding Danio_rerio 0 446
ENSDART00000123081 si:ch211-113a14.14-204 protein_coding Danio_rerio 0 442
ENSDART00000129254 si:ch211-113a14.14-203 protein_coding Danio_rerio 0 433
ENSDART00000126541 si:ch211-113a14.14-202 protein_coding Danio_rerio 0 427
ENSDART00000156376 hist2h3c-001 protein_coding Danio_rerio 0 422
ENSDART00000103016 si:ch211-113a14.14-001 protein_coding Danio_rerio 0 416
ENSDART00000073405 si:ch211-113a14.14-001 protein_coding Danio_rerio 0 411
ENSDART00000151600 protein_coding Danio_rerio 0 361
ENSDART00000093030 protein_coding Danio_rerio 0 350
ENST00000356476 HIST1H3D-001 protein_coding Homo_sapiens 0 505
ENST00000366696 HIST3H3-001 protein_coding Homo_sapiens 0 492
ENST00000614911 HIST1H3E-001 protein_coding Homo_sapiens 0 468
ENST00000618052 HIST1H3F-001 protein_coding Homo_sapiens 0 449

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