C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bf
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105106 Hist1h2bf-001 ENSMUSG00000069268 10090 - 13:23573736-23574196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105106
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105106 0.323±0.23 1.777±0.76 0.380±0.32 11.253±4.52 3.413±0.98 9.427±0.37 0.451±0.17 0.491±0.19 9.737±10.49 2.543±1.12 0.219±0.01 9.614±2.61 7.844±7.72 2.266±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_000B CGP 13:23573736-23574932

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005654 TAS nucleoplasm
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 390
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 385
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 379
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 363
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 344
ENSDART00000103006 protein_coding Danio_rerio 0.000002 57
ENSDART00000089844 protein_coding Danio_rerio 0.00003 53
ENST00000222388 ABCF2-003 protein_coding Homo_sapiens 0 228
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 529
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 545
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 507
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 529
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 540
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 549
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 538
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 512
ENST00000369177 HIST1H2BPS1-001 processed_pseudogene Homo_sapiens 0 324
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 521
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 582
ENST00000377733 HIST1H2BI-001 protein_coding Homo_sapiens 0 534
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 542
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 575
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 555
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 484
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 320
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 481
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 516
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 496
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 569
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 527
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 438
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 508
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 523
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 512
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 531
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 562
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 507
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 496
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 569
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 569
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 532
ENST00000619466 HIST1H2BH-001 protein_coding Homo_sapiens 0 536
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 514
ENST00000620458 HIST2H2BF-003 processed_transcript Homo_sapiens 4.99983e-42 174
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 449

Loading