C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105321 Nfic-001 ENSMUSG00000055053 10090 - 10:81396186-81427187 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105321
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105321 11.148±7.90 13.976±10.62 2.739±2.60 6.009±3.99 2.822±1.35 5.835±6.28 10.810±9.35 1.295±1.29 7.574±4.49 12.168±2.87 8.188±6.32 0.536±0.12 2.278±0.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088668 nfic-201 protein_coding Danio_rerio 0 760
ENSDART00000138604 nfic-001 protein_coding Danio_rerio 0 760
ENSDART00000121795 nfixa-201 protein_coding Danio_rerio 0 536
ENSDART00000135861 nfixa-001 protein_coding Danio_rerio 0 536
ENSDART00000090237 nfia-202 protein_coding Danio_rerio 0 433
ENSDART00000063467 nfia-201 protein_coding Danio_rerio 0 433
ENSDART00000090242 nfia-203 protein_coding Danio_rerio 0 433
ENSDART00000138233 nfia-001 protein_coding Danio_rerio 0 433
ENSDART00000138382 nfia-002 protein_coding Danio_rerio 0 416
ENST00000262878 SAMHD1-001 protein_coding Homo_sapiens 0.0000005 62
ENST00000264990 ACAD11-001 protein_coding Homo_sapiens 0.0000000007 71
ENST00000317233 AFF3-201 protein_coding Homo_sapiens 0.000003 60
ENST00000333991 APAF1-201 protein_coding Homo_sapiens 0.0000001 64
ENST00000341919 NFIC-004 protein_coding Homo_sapiens 0 1683
ENST00000357310 APAF1-202 protein_coding Homo_sapiens 0.0000002 64
ENST00000358552 NFIX-201 protein_coding Homo_sapiens 0 497
ENST00000359972 APAF1-001 protein_coding Homo_sapiens 0.0000002 64
ENST00000360105 NFIX-003 protein_coding Homo_sapiens 0 497
ENST00000366398 RP5-886K2.1-001 processed_pseudogene Homo_sapiens 0.000006 57
ENST00000371655 RAB3B-001 protein_coding Homo_sapiens 0.0000004 64
ENST00000378823 RAD50-001 protein_coding Homo_sapiens 0.000000002 71
ENST00000395111 NFIC-003 protein_coding Homo_sapiens 0 1567
ENST00000397661 NFIX-001 protein_coding Homo_sapiens 0 521
ENST00000409236 AFF3-001 protein_coding Homo_sapiens 0.000004 60
ENST00000414513 CD99P1-002 retained_intron Homo_sapiens 0.00002 57
ENST00000443272 NFIC-006 protein_coding Homo_sapiens 0 1631
ENST00000471702 NPHP3-ACAD11-001 nonsense_mediated_decay Homo_sapiens 0.000000001 71
ENST00000485198 ACAD11-002 nonsense_mediated_decay Homo_sapiens 0.0000000005 71
ENST00000486943 CACNA1F-005 protein_coding Homo_sapiens 0.0000000004 69
ENST00000493286 PPARA-005 retained_intron Homo_sapiens 0.00000000002 75
ENST00000496418 ACAD11-006 retained_intron Homo_sapiens 0.0000000007 71
ENST00000510852 USP53-004 retained_intron Homo_sapiens 0.00000007 64
ENST00000527788 QSER1-002 protein_coding Homo_sapiens 0.00003 57
ENST00000550527 APAF1-004 protein_coding Homo_sapiens 0.0000002 64
ENST00000577307 CCT6B-004 retained_intron Homo_sapiens 0.00000003 66
ENST00000585382 NFIX-009 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000585575 NFIX-006 protein_coding Homo_sapiens 0 499
ENST00000586797 NFIX-005 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000586873 NFIX-011 protein_coding Homo_sapiens 0 486
ENST00000586919 NFIC-011 protein_coding Homo_sapiens 0 782
ENST00000587260 NFIX-007 protein_coding Homo_sapiens 0 503
ENST00000587760 NFIX-002 protein_coding Homo_sapiens 0 499
ENST00000588228 NFIX-004 protein_coding Homo_sapiens 0 497
ENST00000588555 SCAMP4-002 retained_intron Homo_sapiens 0.00000005 64
ENST00000589123 NFIC-001 protein_coding Homo_sapiens 0 1567
ENST00000589537 NFIC-010 retained_intron Homo_sapiens 0 573
ENST00000590027 NFIX-008 protein_coding Homo_sapiens 0 492
ENST00000590282 NFIC-005 protein_coding Homo_sapiens 0 1633
ENST00000591028 NFIX-010 protein_coding Homo_sapiens 0 486
ENST00000592199 NFIX-013 protein_coding Homo_sapiens 0 521
ENST00000595101 USE1-002 protein_coding Homo_sapiens 0.000000001 69
ENST00000599380 SLC27A1-004 nonsense_mediated_decay Homo_sapiens 0.00001 57
ENST00000615596 GTF2I-009 retained_intron Homo_sapiens 0.00000008 62

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