C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105349 Mbd3-002 ENSMUSG00000035478 10090 - 10:80392539-80399550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105349
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105349 38.700±13.12 26.560±7.12 25.048±6.69 60.361±8.24 28.698±10.44 22.852±3.23 17.584±3.63 39.061±3.91 23.421±11.02 24.846±8.07 23.181±4.66 34.915±11.75 28.075±8.44 33.949±4.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YO CIL_0003YO_0002 CGP 10:80380355-80399550
CIL_0003Z8 CIL_0003Z8_0002 CGP 10:80392539-80406830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IDA chromatin
GO:0000792 IDA heterochromatin
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006346 IDA methylation-dependent chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0008327 ISS methyl-CpG binding
GO:0009888 IMP tissue development
GO:0016573 IMP histone acetylation
GO:0016581 IPI NuRD complex
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000156825 MBD3-002 protein_coding Homo_sapiens 0 961
ENST00000434436 MBD3-001 protein_coding Homo_sapiens 0 846
ENST00000585937 UQCR11-001 nonsense_mediated_decay Homo_sapiens 0 845
ENST00000585967 MBD3-004 protein_coding Homo_sapiens 0 592
ENST00000589064 MBD3-010 processed_transcript Homo_sapiens 0 821
ENST00000590550 MBD3-009 protein_coding Homo_sapiens 0 846
ENST00000590830 MBD3-008 retained_intron Homo_sapiens 0 645
ENST00000592012 MBD3-007 nonsense_mediated_decay Homo_sapiens 0 821
ENST00000592361 MBD3-005 protein_coding Homo_sapiens 0 540

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