C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105453 Col13a1-004 ENSMUSG00000058806 10090 - 10:61838236-61979073 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105453
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105453 0.235±0.13 0.100±0.00 0.419±0.16 0.319±0.10 0.240±0.02 0.167±0.00 0.336±0.22 5.758±2.37 0.201±0.00 0.566±0.28 0.715±0.18 0.155±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0002 VISTA 10:61828052-62430842

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354547 COL13A1-002 protein_coding Homo_sapiens 0 2080
ENST00000357811 COL13A1-004 protein_coding Homo_sapiens 0 2795
ENST00000398969 COL13A1-201 protein_coding Homo_sapiens 0 1083
ENST00000398975 COL13A1-006 protein_coding Homo_sapiens 0 693
ENST00000398978 COL13A1-001 protein_coding Homo_sapiens 0 1201
ENST00000456019 COL13A1-008 protein_coding Homo_sapiens 0 800
ENST00000478219 COL13A1-009 retained_intron Homo_sapiens 0 388
ENST00000479733 COL13A1-003 nonsense_mediated_decay Homo_sapiens 0 974
ENST00000517713 COL13A1-013 protein_coding Homo_sapiens 0 2102
ENST00000518052 COL13A1-012 processed_transcript Homo_sapiens 0 241
ENST00000520133 COL13A1-015 protein_coding Homo_sapiens 0 1417
ENST00000520267 COL13A1-011 protein_coding Homo_sapiens 0 1086
ENST00000522165 COL13A1-014 protein_coding Homo_sapiens 0 2207

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