C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105454 Col13a1-001 ENSMUSG00000058806 10090 - 10:61838236-61979108 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000105454
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000105454 0.070±0.00 0.026±0.00 0.123±0.00 0.207±0.00 0.082±0.00 0.080±0.00 0.180±0.04 0.334±0.10 0.292±0.03 0.430±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0002 VISTA 10:61828052-62430842

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354547 COL13A1-002 protein_coding Homo_sapiens 0 974
ENST00000357811 COL13A1-004 protein_coding Homo_sapiens 0 974
ENST00000398969 COL13A1-201 protein_coding Homo_sapiens 0 1055
ENST00000398975 COL13A1-006 protein_coding Homo_sapiens 0 693
ENST00000398978 COL13A1-001 protein_coding Homo_sapiens 0 1832
ENST00000456019 COL13A1-008 protein_coding Homo_sapiens 0 804
ENST00000478219 COL13A1-009 retained_intron Homo_sapiens 0 388
ENST00000479733 COL13A1-003 nonsense_mediated_decay Homo_sapiens 0 2889
ENST00000517713 COL13A1-013 protein_coding Homo_sapiens 0 974
ENST00000518052 COL13A1-012 processed_transcript Homo_sapiens 0 241
ENST00000520133 COL13A1-015 protein_coding Homo_sapiens 0 974
ENST00000520267 COL13A1-011 protein_coding Homo_sapiens 0 1055
ENST00000522165 COL13A1-014 protein_coding Homo_sapiens 0 1055

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