C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105711 Clcn6-002 ENSMUSG00000029016 10090 - 4:148006589-148038770 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryTestisENSMUST00000105711
Transcript ID Adrenal Breast Colon Liver Ovary Testis
ENSMUST00000105711 1.794±0.27 1.848±0.06 0.786±0.29 0.224±0.00 2.007±0.34 0.253±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0006821 IEA chloride transport
GO:0016020 IEA membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312413 CLCN6-201 protein_coding Homo_sapiens 0 2512
ENST00000346436 CLCN6-001 protein_coding Homo_sapiens 0 2813
ENST00000376490 CLCN6-002 processed_transcript Homo_sapiens 0 1157
ENST00000376491 CLCN6-004 processed_transcript Homo_sapiens 0 1068
ENST00000376492 CLCN6-003 processed_transcript Homo_sapiens 0 1205
ENST00000376496 CLCN6-005 protein_coding Homo_sapiens 0 2813
ENST00000376497 CLCN6-006 protein_coding Homo_sapiens 0 481
ENST00000494028 CLCN6-007 processed_transcript Homo_sapiens 0 446

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