C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Eph receptor B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105845 Ephb2-001 ENSMUSG00000028664 10090 - 4:136647539-136835988 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105845
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105845 2.109±0.00 0.976±0.05 8.063±6.16 0.269±0.02 3.566±0.30 0.041±0.01 0.370±0.07 0.029±0.03 0.115±0.00 0.004±0.00 1.142±0.41 0.049±0.03 0.038±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000209 CIL_000209_0002 CGP 4:136622621-136835988

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IGI cell morphogenesis
GO:0004872 IDA receptor activity
GO:0005003 IDA ephrin receptor activity
GO:0005005 TAS transmembrane-ephrin receptor activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005887 TAS integral component of plasma membrane
GO:0006468 IDA protein phosphorylation
GO:0007169 IDA transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007411 IDA axon guidance
GO:0007612 IMP learning
GO:0008046 IDA axon guidance receptor activity
GO:0009887 IMP organ morphogenesis
GO:0018108 IDA peptidyl-tyrosine phosphorylation
GO:0021631 IMP optic nerve morphogenesis
GO:0021952 IMP central nervous system projection neuron axonogenesis
GO:0031290 IDA retinal ganglion cell axon guidance
GO:0043025 IDA neuronal cell body
GO:0048013 IDA ephrin receptor signaling pathway
GO:0048168 IMP regulation of neuronal synaptic plasticity
GO:0048170 IMP positive regulation of long-term neuronal synaptic plasticity
GO:0048593 IMP camera-type eye morphogenesis
GO:0050770 IDA regulation of axonogenesis
GO:0050771 IDA negative regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043756 ephb2b-001 protein_coding Danio_rerio 0 1953
ENSDART00000050395 EPHB3 (2 of 2)-201 protein_coding Danio_rerio 0 628
ENSDART00000081140 CT990561.1-201 protein_coding Danio_rerio 0 510
ENST00000166244 EPHA8-001 protein_coding Homo_sapiens 5e-17 95
ENST00000330394 EPHB3-001 protein_coding Homo_sapiens 0 1088
ENST00000374627 EPHB2-004 protein_coding Homo_sapiens 0 3711
ENST00000374630 EPHB2-003 protein_coding Homo_sapiens 0 4102
ENST00000374632 EPHB2-002 protein_coding Homo_sapiens 0 4169
ENST00000374644 EPHA8-002 protein_coding Homo_sapiens 2e-17 95
ENST00000400191 EPHB2-001 protein_coding Homo_sapiens 0 3986
ENST00000450253 EIF4E-001 protein_coding Homo_sapiens 0.00002 58
ENST00000465676 EPHB2-005 processed_transcript Homo_sapiens 0 1258
ENST00000480615 SNRNP200-003 retained_intron Homo_sapiens 0.000002 58
ENST00000490436 EPHB2-006 processed_transcript Homo_sapiens 0 267
ENST00000532428 APIP-002 nonsense_mediated_decay Homo_sapiens 0.00002 57
ENST00000538803 EPHA8-201 protein_coding Homo_sapiens 2e-17 95
ENST00000544305 EPHB2-201 protein_coding Homo_sapiens 0 2050

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