C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin T3, skeletal, fast
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105949 Tnnt3-009 ENSMUSG00000061723 10090 + 7:142498872-142516004 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverOvaryPlacentaENSMUST00000105949
Transcript ID Adipose Brain Breast Colon Heart Liver Ovary Placenta
ENSMUST00000105949 1.100±0.00 0.333±0.00 0.155±0.00 0.186±0.00 0.371±0.00 0.090±0.04 0.970±0.26 2.835±1.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_0005NK CIL_0005NK_0003 CGP 7:142460809-142506771
CIL_0003FO CIL_0003FO_0003 CGP 7:142491074-142516009
CIL_00048I CIL_00048I_0002 CGP 7:142498836-142540747

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005861 IEA troponin complex
GO:0006942 IEA regulation of striated muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278317 TNNT3-001 protein_coding Homo_sapiens 0 841
ENST00000344578 TNNT3-011 protein_coding Homo_sapiens 0 904
ENST00000381557 TNNT3-006 protein_coding Homo_sapiens 0 933
ENST00000381558 TNNT3-004 protein_coding Homo_sapiens 0 880
ENST00000381563 TNNT3-012 protein_coding Homo_sapiens 0 859
ENST00000381579 TNNT3-003 protein_coding Homo_sapiens 0 774
ENST00000381589 TNNT3-002 protein_coding Homo_sapiens 0 837
ENST00000397301 TNNT3-010 protein_coding Homo_sapiens 0 841
ENST00000397304 TNNT3-014 protein_coding Homo_sapiens 0 845
ENST00000446240 TNNT3-015 protein_coding Homo_sapiens 0 739
ENST00000453458 TNNT3-007 protein_coding Homo_sapiens 0 715
ENST00000492075 TNNT3-009 processed_transcript Homo_sapiens 0 586
ENST00000493234 TNNT3-008 processed_transcript Homo_sapiens 0 486

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