C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106023 Irf7-003 ENSMUSG00000025498 10090 - 7:141262706-141266421 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverENSMUST00000106023
Transcript ID Colon Liver
ENSMUST00000106023 19.281±5.45 5.645±2.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S8 CIL_0006S8_0003 CGP 7:141215860-141262750
CIL_0006RQ CIL_0006RQ_0003 CGP 7:141228784-141266481
CIL_0003OO CIL_0003OO_0002 CGP 7:141262706-141276786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0000982 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0016064 IMP immunoglobulin mediated immune response
GO:0045351 IMP type I interferon biosynthetic process
GO:0060340 IMP positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330243 IRF7-001 protein_coding Homo_sapiens 0 435
ENST00000348655 IRF7-005 protein_coding Homo_sapiens 0 435
ENST00000397566 IRF7-201 protein_coding Homo_sapiens 0 435
ENST00000397570 IRF7-202 protein_coding Homo_sapiens 0 435
ENST00000397574 IRF7-002 protein_coding Homo_sapiens 0 435
ENST00000469048 IRF7-004 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000525445 IRF7-006 protein_coding Homo_sapiens 0 435
ENST00000531912 IRF7-013 retained_intron Homo_sapiens 0 230
ENST00000532326 IRF7-012 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000533182 IRF7-007 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000612534 IRF7-203 protein_coding Homo_sapiens 0 435
ENST00000617397 IRF7-204 protein_coding Homo_sapiens 0 435
ENST00000621391 IRF7-205 protein_coding Homo_sapiens 0 435

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