C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab40B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106107 Rab40b-001 ENSMUSG00000025170 10090 - 11:121356125-121388251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106107 4.611±0.29 5.757±0.51 1.939±0.29 3.584±2.08 4.111±1.77 1.367±0.56 0.901±0.23 1.114±0.43 0.318±0.09 1.464±0.15 7.575±0.63 2.906±1.19 0.160±0.11 0.190±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IW CIL_0000IW_0002 CGP 11:121327224-121388251
CIL_0000IX CIL_0000IX_0002 CGP 11:121356125-121431288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016567 IEA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087047 rab40c-001 protein_coding Danio_rerio 0 370
ENST00000218249 RAB40AL-001 protein_coding Homo_sapiens 0 817
ENST00000248139 RAB40C-001 protein_coding Homo_sapiens 0 431
ENST00000269347 RAB40B-002 protein_coding Homo_sapiens 0 784
ENST00000304236 RAB40A-001 protein_coding Homo_sapiens 0 782
ENST00000314124 TMEM40-001 protein_coding Homo_sapiens 0.00004 55
ENST00000370331 EVI5-001 protein_coding Homo_sapiens 0.00001 58
ENST00000372633 RAB40A-002 protein_coding Homo_sapiens 0 782
ENST00000380765 SPDYE3-003 retained_intron Homo_sapiens 0.0001 53
ENST00000382040 RSAD2-001 protein_coding Homo_sapiens 0.000001 60
ENST00000435218 TMEM40-003 protein_coding Homo_sapiens 0.00003 55
ENST00000435575 TMEM40-002 protein_coding Homo_sapiens 0.00003 55
ENST00000491809 SPATA17-005 processed_transcript Homo_sapiens 0.000000000001 77
ENST00000509637 RAB40C-006 nonsense_mediated_decay Homo_sapiens 6e-23 111
ENST00000535977 RAB40C-201 protein_coding Homo_sapiens 0 431
ENST00000538492 RAB40C-202 protein_coding Homo_sapiens 0 431
ENST00000538809 RAB40B-005 protein_coding Homo_sapiens 0 427
ENST00000539661 RAB40C-203 protein_coding Homo_sapiens 0 431
ENST00000540033 EVI5-201 protein_coding Homo_sapiens 0.00001 58
ENST00000563109 RAB40C-003 protein_coding Homo_sapiens 0 219
ENST00000563957 SEPT1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000565511 RAB40C-004 nonsense_mediated_decay Homo_sapiens 4.00001e-41 172
ENST00000566290 RAB40C-008 protein_coding Homo_sapiens 0 370
ENST00000568586 RAB40C-009 protein_coding Homo_sapiens 0 353
ENST00000569575 RAB40C-007 protein_coding Homo_sapiens 0 303
ENST00000570676 RAB40B-008 retained_intron Homo_sapiens 0 784
ENST00000571995 RAB40B-001 protein_coding Homo_sapiens 0 987
ENST00000572603 RAB40B-006 processed_transcript Homo_sapiens 0 257
ENST00000573395 RAB40B-011 retained_intron Homo_sapiens 0 464
ENST00000574132 RAB40B-009 retained_intron Homo_sapiens 0 669
ENST00000576359 RAB40B-003 retained_intron Homo_sapiens 0 294
ENST00000588839 NFIC-007 processed_transcript Homo_sapiens 0.00000007 62
ENST00000601390 RPS16-002 retained_intron Homo_sapiens 0.0000000001 73

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